- Non-Oscillatory Central Schemes for the Incompressible 2D Euler Equations, Mathematical Research Letters, 4, 1997, pp. 321-340. (with E. Tadmor)
- On a Class of a Thermal Blow-up Patterns, Physics Letters A., 236, 1997, pp. 483-493. (with P. Rosenau)
- From Semi-Discrete to Fully-Discrete: The Stability of Runge-Kutta Schemes by the Energy Method, SIAM Review, 40, no.1, 1998, pp. 40-73. (with E. Tadmor)
- On Burgers-type Equations with Non-Monotonic Dissipative Fluxes, Communications on Pure and Applied Mathematics, 51, no. 5, 1998, pp. 443-473. (with A. Kurganov and P. Rosenau)
- High-Resolution Non-Oscillatory Central Schemes with Non-Staggered Grids for Hyperbolic Conservation Laws, SIAM Journal on Numerical Analysis, 35, no. 6, 1998, pp. 2147-2168. (with G.-S. Jiang, C.-T. Lin, S. Osher and E. Tadmor)
- Third-order 2D Central Schemes for Hyperbolic Conservation Laws, INRIA School on Hyperbolic Systems, Vol. I, 1998, pp. 489-504.
- Self-Focusing in the Complex Ginzburg-Landau Limit of the Critical Nonlinear Schrodinger Equation, Physics Letters A., 249, 1998, pp. 286-294. (with G. Fibich)
- Compactons in a Class of Nonlinearly Quintic Equations, Physics Letters A., 252, 1999, pp. 297-306. (with P. Rosenau)
- A Modified Structured Central Scheme for 2D Hyperbolic Conservation Laws, Applied Math Letters, 12, no. 6, 1999, pp. 89-96. (with T. Katsaounis)
- Central WENO Schemes for Hyperbolic Systems of Conservation Laws, Mathematical Modeling and Numerical Analysis, 33, no. 3, 1999, pp. 547-571. (with G. Puppo and G. Russo)
- Dissipative Behavior of Some Fully Non-Linear KdV-Type Equations, Physica D., 137, 2000, pp. 277-294 (with Y. Brenier)
- A Third Order Central WENO Scheme for 2D Conservation Laws, Applied Numerical Mathematics, 33, 2000, pp. 407-414. (with G. Puppo and G. Russo)
- On the Behavior of the Total Variation in CWENO Methods for Conservation Laws, Applied Numerical Mathematics, 33, 2000, pp. 415-421. (with G. Puppo and G. Russo)
- Optimal Prediction for Hamiltonian Partial Differential Equations, Journal of Computational Physics, 162, 2000, pp. 267-297. (with A.J. Chorin and R. Kupferman)
- Compact Central WENO Schemes for MultiDimensional Conservation Laws, SIAM Journal on Scientific Computing, 22, 2000, pp. 656-672. (with G. Puppo and G. Russo)
- A Third-Order Semi-Discrete Central Scheme for Conservation Laws and Convection-Diffusion Equations, SIAM Journal on Scientific Computing, 22, 2000, pp. 1461-1488. (with A. Kurganov)
- Particle Methods for Dispersive Equations, Journal of Computational Physics, 171, 2001, pp. 708-730. (with A. Chertock)
- Central-Upwind Schemes for the Saint-Venant System, Mathematical Modelling and Numerical Analysis, 36, 2002, pp. 397-425. (with A. Kurganov)
- A Fourth Order Central WENO Scheme for Multi-Dimensional Hyperbolic Systems of Conservation Laws, SIAM Journal on Scientific Computing, 24, 2002, pp. 480-506. (with G. Puppo and G. Russo)
- A Particle Method for the KdV Equation, Journal of Scientific Computing, 17, 2002, pp. 491-499. (with A. Chertock)
- High-order Central WENO Schemes for 1D Hamilton-Jacobi Equations, in F. Brezzi et al. (Eds.), ``Numerical Mathematics and Advanced Applications'', Proc. ENUMATH 2001, Ischia, Italy; Springer-Verlag, Italy, 2003, pp.45--54. (with S. Bryson)
- High-Order Central WENO Schemes for Multi-dimensional Hamilton-Jacobi Equations, in T.Y. Hou and E. Tadmor (Eds.), ``Hyperbolic Problems: Theory, Numerics, Applications'', Proc. Ninth International Conference on Hyperbolic Problems, CalTech, 2002; Springer-Verlag, Berlin, 2003, pp.387--396. (with S. Bryson)
- High-Order Semi-Discrete Central-Upwind Schemes for Multi-Dimensional Hamilton-Jacobi Equations, Journal of Computational Physics, 189, 2003, pp. 63-87. (with S. Bryson)
- High-Order Central WENO Schemes for Multi-Dimensional Hamilton-Jacobi Equations, SIAM Journal of Numerical Analysis, 41, 2003, pp. 1339-1369. (with S. Bryson)
- Central Schemes for Multi-Dimensional Hamilton-Jacobi Equations, SIAM Journal on Scientific Computing, 25, 2003, pp. 769-791. (with S. Bryson)
- Local Discontinuous Galerkin Methods for Nonlinear Dispersive Equations, Journal of Computational Physics, 196, 2004, pp. 751-772. (with C.-W. Shu and J. Yan)
- Central Schemes for Hamilton-Jacobi Equations on Unstructured Grids, in M. Feistauer et al. (Eds.), ``Numerical Mathematics and Advanced Applications'', Proceedings of ENUMATH 2003, Prague, Czech Republic; Springer-Verlag, Berlin, 2004, pp.623--630. (with S. Nayak)
- On Wavelet-Based Numerical Homogenization, Multiscale Modeling and Simulation, 3, 2004, pp. 65-88. (with A. Chertock)
- Registration-based Morphing of Active Contours for Segmentation of CT Scans, Mathematical Biosciences and Engineering, 2, 2005, pp. 79-96. (with Y.-N. Young)
- Semi-Discrete Central-Upwind Schemes with Reduced Dissipation for Hamilton-Jacobi Equations, IMA Journal of Numerical Analysis, 25, 2005, pp. 113-138. (with S. Bryson, A. Kurganov, and G. Petrova)
- High-Order Shock-Capturing Methods for Modeling Dynamics of the Solar Atmosphere, Physica D., 201, 2005, pp. 1-26. (with S. Bryson and A. Kosovichev)
- Quantitation of the a Priori Dosimetric Capabilities of Spatial Points in Inverse Planning and its Significant Implication in Defining IMRT Solution Space, Physics in Medicine and Biology, 50, 2005, pp. 1469-1482. (with Z. Shou, Y. Yang, C. Cotrutz and L. Xing)
- PDE-based Segmentation for Radiotherapy Treatment Planning, Mathematical Biosciences and Engineering, 2, 2005, pp. 209-226. (with F. Gibou, C. Cardenas, P. Liu, and A. Boyer)
- Approximate Model Equations for Water Waves, Communications in Mathematical Sciences, 3, 2005, pp. 159-170 (with R. Fetecau)
- Post Transplantation Dynamics of the Immune Response to Chronic Myelogenous Leukemia, Journal of Theoretical Biology, 236, 2005, pp. 39-59 (with R. DeConde, P. Kim, and P. Lee)
- A Stable Semi-Discrete Central Scheme for the Two-Dimensional Incompressible Euler Equations, IMA Journal of Numerical Analysis, 25, 2005, pp. 507-522.
- Balanced Central Schemes for the Shallow Water Equations on Unstructured Grids, SIAM Journal on Scientific Computing, 27, 2005, pp. 532-552. (with S. Bryson)
- Multiscale Image Registration, Mathematical Biosciences and Engineering, 3, 2006, pp. 389-418. (with D. Paquin, E. Schreibmann, and L. Xing)
- On the Total Variation of High-Order Semi-Discrete Central Schemes for Conservation Laws, Journal of Scientific Computing, 27, 2006, pp. 163-175. (with S. Bryson)
- Mapped WENO and Weighted Power ENO Reconstructions in Semi-Discrete Central Schemes for Hamilton-Jacobi Equations, Applied Numerical Mathematics, 56, 2006, pp. 1211-1224. (with S. Bryson)
- Central WENO Schemes for Hamilton-Jacobi Equations on Triangular Meshes, SIAM Journal on Scientific Computing, 28, 2006, pp. 2229-2247 (with S. Nayak, C.-W. Shu, and Y.-T. Zhang)
- On the Stability Crossing Boundaries of Some Delay Systems Modeling Immune Dynamics in Leukemia, Proc 17th Int Symp on Mathematical Theory of Networks and Systems, Kyoto, 2006 (with S.-I. Niculescu, P. Kim, and K. Gu)
- Modeling Regulation Mechanisms in the Immune System, Journal of Theoretical Biology, 246, 2007, pp. 33-69 (with P. Kim and P. Lee)
- On Stability of a Combined Gleevec and Immune Model of Chronic Myelogenous Leukemia: Exploiting Delay System Structure. Proceedings of 2007 IFAC Symposium on Nonlinear Control (NOLCOS'07), Pretoria (South Africa), (with S. Niculescu, P. Kim and P. Lee)
- Mini-Transplants for Chronic Myelogenous Leukemia: A Modeling Perspective, in Queinnec et al. (eds.) "Biology and Control Theory: Current Challenges", Lecture notes in control and information sciences, LNCIS 357, Springer, Berlin, 2007, pp. 3-20. (with P. Kim and P. Lee)
- Hybrid Multiscale Landmark and Deformable Registration, Mathematical Biosciences and Engineering, 4, 2007, pp. 711-737. (with D. Paquin and L. Xing)
- Group Dynamics of Phototaxis: Interacting Stochastic Many-Particle Systems and their Continuum Limit, in S. Benzoni-Gavage and D. Serre (Eds.), "Hyperbolic Problems: Theory, Numerics, Application", Proceedings of HYP 2006, Lyon, France; Springer-Verlag, Berlin, 2008, pp. 145-169. (with D. Bhaya and T. Requiejo)
- Modeling Imatinib-Treated Chronic Myelogenous Leukemia: Reducing the Complexity of Agent-Based Models, Bulletin of Mathematical Biology, 70, pp. 724-744. (with P. Kim and P. Lee)
- Modeling Group Dynamics of Phototaxis: From Particles to PDEs, Discrete and Continuous Dynamical Systems B, 9, 2008, pp. 108-128 (with T. Requiejo)
- Multiscale Deformable Registration of Noisy Medical Images, Mathematical Biosciences and Engineering, 5, 2008, pp. 125-144 (with D. Paquin and L. Xing)
- Dynamics and Potential Impact of the Immune Response to Chronic Myelogenous Leukemia, PLOS Computational Biology, 4, 2008, e1000095 doi:10.1371/journal.pcbi.1000095 (with P. Kim and P. Lee)
- Stochastic Models for Phototaxis, Bulletin of Mathematical Biology, to appear (with T. Requeijo)
- Multiscale Registration of Planning CT and Daily Cone Beam CT Images for Adaptive Radiation Therapy, Medical Physics, to appear (with D. Paquin and L. Xing)
- A PDE Model for Imatinib-Treated Chronic Myelogenous Leukemia, Bulletin of Mathematical Biology, to appear (with P. Kim and P. Lee)
- Stability Crossing Boundaries of Delay Systems Modeling Immune Dynamics in Leukemia, Submitted (with K. Gu, P. Kim, P. Lee, and S. Niculescu)
- Dynamics and Functional Discrepancies in CD4 and CD8 T Cell Responses to EBV in Acute Infectious Mononucleosis, Submitted (with A. Johannsen, N. Yan, P. Kim, D. Paquin, and P. Lee)
- Analysis of Models of Chronic Myelogenous Leukemia with Treatment Options using Structural Methods and Computation: Sensitivity to Nonlinearity and Delay, Submitted (with M. Peet, P. Kim, S.-I. Niculesco, and A. Papachristodoulou)
- Particle, Kinetic, and Fluid Models for Phototaxis, Submitted (with S.-Y. Ha)
- On the Role of Adaptive Regulatory Cells in the Immune System, In preparation (with P. Kim and P. Lee)